What if we agreed for the church to withhold SS, Fica, and income tax?

I have been paid, for 9 years, as a church employee, including withholding of income, fica, and ss. I read above that churches cannot do this, but I'm a party to them doing it, as they asked me and I agreed to it. Are we in trouble for that? I was hired as a youth pastor, then was an interim pastor, and now am finishing my first year as lead pastor.